DPhil in Biology

Molecular regulation of terpene biosynthesis

Terpenes are a highly diverse class of plant metabolites which vary among individuals [1], between species [2], and in response to biotic aggressors [3]. This variability may be exploited to produce specific terpenes of commercial value due to their uses in medicine, cosmetics, and food. The biochemical pathways and enzymes responsible for their synthesis have been investigated in diverse plant systems from Arabidopsis to conifer trees, among others [3]. This knowledge forms a foundation for producing and isolating terpenes in plant-based systems including cell cultures. The ability to regulate terpene biosynthesis at the gene expression level is crucial in this process; however, the regulatory mechanisms are poorly understood. Unlocking this knowledge holds huge potential for more precise and controlled terpene production systems.

The project aims to identify transcriptional and epigenetic regulatory mechanisms of terpene biosynthesis in plants through three research strands. First, we will analyse R2R3-MYB transcription factors based on our previous findings that over-expression variably increased the amounts and diversity of mono and sesquiterpenes in conifers, depending on the promoter used in stable transformations [5]. Second, we will investigate epigenomic control of terpene biosynthesis. Here, we may use plant hormones such as jasmonic acid to stimulate terpene accumulation both in the short-term through transcription factor activity and long-term responsiveness through chromatin modification. We will study epigenomic changes using a multi-omics approach to determine genomic regions associated with histone modifications, DNA hypomethylation and terpene accumulation responsiveness. Thirdly, we will use knowledge from the above to engineer targeted and inducible regulation of terpene biosynthesis through transcription factor manipulation and epigenomic modifications.

The project will screen and select cell-based systems for ease of manipulation and genetic transformation in addition to the potential to produce terpenoids of interest [6]. The expected results include the identification of molecular methods that allow us to manipulate terpene biosynthesis in regard to their quantity, quality, or both. Ultimately, this will allow us to upscale the production of terpenes of commercial interest.

Bioinformatic analysis of gene sequences and transcriptome profiling results
Molecular isolation and cloning techniques
General knowledge of cell culture and transformation
Spectroscopy methods
Methods for specific plant cell culturing, transient and stable transformation
Analyses of terpene using GC-MS
Epigenomic engineering methods and systems for inducible gene expression
  1. Tumas, H. R., Soufi, Z., Woolliams, J. A., J McLean, P., Lee, S., Cottrell J., J Ilska J. J., Lopez, G., MacKay, J. (2021) Stranger in a strange land: genetic variation of native insect resistance biomarkers in UK Sitka spruce (Picea sitchensis [Bong.] Carr.), Forestry: Internat. J. For. Res., 94, 734–744, https://doi.org/10.1093/forestry/cpab013
  2. Boubeker, S., Cusson, M., Despland, E., Bauce, E., Ripoll, L., Pichette, A., MacKay, J., Deslauriers, A. (2026) Temporal and species-dependent variation in foliar monoterpene compositions of conifers under spruce budworm defoliation. Ann. For. Sci. https://doi.org/10.1186/
  3. Keeling, C.I. and Bohlmann, J. (2006), Genes, enzymes and chemicals of terpenoid diversity in the constitutive and induced defence of conifers against insects and pathogens*. New Phytol., 170: 657-675. https://doi.org/10.1111/j.1469-8137.2006.01716.x
  4. Bedon, F., Bomal, C., Caron, S., Levasseur, C., Boyle, B., Mansfield, S.D., Schmidt, A., Gershenzon, J., Grima-Pettenati, J., Séguin, A., MacKay, J., (2010). Subgroup 4 R2R3-MYBs in conifer trees: gene family expansion and contribution to the isoprenoid-oriented response. J. Exp. Bot., 61: 3847-3864
  5. Warren, R.L., Keeling, C.I., Yuen, M.M.S., Raymond, A., et al. (2015) Improved white spruce (Picea glauca) genome assemblies and annotation of large gene families of conifer terpenoid and phenolic defense metabolism. Plant J., 83: 189-212. https://doi.org/10.1111/tpj.12886
  6. Chandran, H., Meena, M., Barupal, T., Sharma, K. Plant tissue culture as a perpetual source for production of industrially important bioactive compounds. Biotechnol. Rep. (Amst). 2020 Apr 20;26:e00450. doi: 10.1016/j.btre.2020.e00450.

Plant Biology Institute

Feeding the world’s growing population in the face of climate change by enabling every farm on earth to produce more food with fewer resources and less land.

EIT Supervisors